Velmeshev_et_al.1 CELLxGENE Census 2024-07-01 cutoff 0 MADs 5
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
This report has been generated by the PavlidisLab/sc-annotation-pipeline analysis pipeline.
/space/grp/rschwartz/rschwartz/cell_annotation_cortex.nf/work/98/915d17c7b8907a5b8b6ea8aa2fa9bb/Velmeshev_et_al.1
Sample cell type composition
Composition per sample of predicted cell types.
Leiden cluster composition (cell types)
Leiden clustering performed on log-transformed data with top 2000 variable genes, 10 PCs, 30 neighbors, resolution = 0.3.
Cell type markers
Expression of select markers. Count are averaged across cell-type labels and z-score normalized across genes.
Cell type UMAP
UMAP of the cell type labels, sample names and leiden clusters.